Description Usage Arguments Value Examples

View source: R/prep_vcf_for_est_m_rd.R

convert a VCF into an 012,-1 matrix and read_depth bin matrix for estimation

1 | ```
prep_vcf_for_est_m_rd(v, DF = "DP", minBin)
``` |

`v` |
a vcfR object into which a VCF file has been read |

`DF` |
Field to use for obtaining total read depth. Currently all that is available is DP. |

`minBin` |
minimum number of observations for each read depth bin |

This sends back a list with `mat012`

: the 012,-1 matrix of genotypes, and
`dp_bins_list`

: the list returned by bin_depths().

1 | ```
pv <- prep_vcf_for_est_m_rd(lobster_buz_2000, minBin = 1000)
``` |

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