The GI Settings are just the settings of another node, in this case one "hidden" inside the Renderer node itself, so it behaves the same way as when you open any other node window: it closes the previous one and opens the new one. The way to avoid this is to enable "Stay Open" for your node, of course.
Anyway, very strange that this problem is occurring only for you. I'll see if Matt has any ideas...
- Oshyan