YARG !!! Job done, thanks guys.
Actually the solution was so blinding obvious I had completely forgotten I had already done it earlier in the year. doh slaps head
Since an alpha mask is being used theres absolutely no point in having any transparent or white areas on the colour image. I simple filled the blank problem areas with a mix of the highlights and shadows of the initial image and, voila, anything that was white is now rendered leaf coloured.
By the way, that plugin looks very useful. I've always had a problem when photographing leaves for textures of removing the shadow caused by the flash and cleaning up the image was always tedious, now easy.
Thanks
Richard