Can't sure without the file but it looks more like Godrays that some are trying to render sometimes without success.
Render a small part with the Planet surface enabled and see. If they are still there they are definitely Godrays.
Try some crop renders with and without the secondary and primary and the other way around in the cloud and-or atmosphere nodes.
Different Shadow options might help too.On-OFF etc. I haven't tried it so all is just a guess.
Edit: If you mean that the lower part is noisy then i would use first higher atmosphere number of samples (as Chris said),
then higher cloud samples,higher detail rendering ,higher AA settings and higher GI settings,